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 PRNA.rar 24,915.0 kB 1 14-May-2011 21:39 LingyunWu

This page (revision-10) was last changed on 20-Nov-2011 22:41 by LingyunWu

This page was created on 04-Feb-2010 11:41 by LingyunWu

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* Last updated: April 10, 2010
* Last updated: May 13, 2010
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Welcome to our website! This is an webpage for our paper "Prediction of protein-RNA binding sites by a random forest method with combined features". In the paper, we proposed a novel random forest (RF) method to predict RNA binding sites in proteins by integrated features, including mutual interaction propensity between protein residues and their partner RNA nucleotide. The sequence derived features and structure derived features are also combined together with mutual interaction propensity to build a classifier. You can find the source data, source code and supporting materials which referred in the paper. Pay attention to the users: You can use and redistribute the data and code if you accept [GNU|http://www.gnu.org/] [General Public License (GPL)|http://www.gnu.org/copyleft/gpl.html].
Welcome to our website! This is a webpage for our paper "Prediction of protein-RNA binding sites by a random forest method with combined features". In the paper, we proposed a novel random forest (RF) method to predict RNA binding sites in proteins by integrated features, including mutual interaction propensity between protein residues and their partner RNA nucleotide. The sequence derived features and structure derived features are also combined together with mutual interaction propensity to build a classifier. You can find the source data, code and supplementary materials which referred in the paper. Pay attention to the users: You can use and redistribute the data and code if you accept [GNU|http://www.gnu.org/] [General Public License (GPL)|http://www.gnu.org/copyleft/gpl.html].
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!!!References
!!!Reference
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* Liu ZP, Wu LY, Wang Y, Zhang XS, and Chen L. __Prediction of protein-RNA binding sites by a random forest method with combined features__. ''In Submission.''
* Liu ZP, Wu LY, Wang Y, Zhang XS, and Chen L. __Prediction of protein-RNA binding sites by a random forest method with combined features__. Bioinformatics 26(13):1616-1622.
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!!!Data and Codes
!!!Data and Code
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* [PRNA.rar|File:PRNA/PRNA.rar]
* [PRNA.rar|PRNA/PRNA.rar]
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There are [{org.goodjava.plugin.hitcounter.HitCounter}] visitors since February 4, 2010
Category: [Supplementary] [Software]
Version Date Modified Size Author Changes ... Change note
10 20-Nov-2011 22:41 1.243 kB LingyunWu to previous
9 01-Jun-2011 15:12 1.326 kB ZhipingLiu to previous | to last
8 01-Jun-2011 15:11 1.327 kB ZhipingLiu to previous | to last
7 01-Jun-2011 15:10 1.331 kB ZhipingLiu to previous | to last
6 15-May-2011 16:16 1.319 kB LingyunWu to previous | to last
5 14-May-2011 21:40 1.287 kB LingyunWu to previous | to last
4 13-May-2010 13:13 1.292 kB LingyunWu to previous | to last
3 10-Apr-2010 16:53 1.294 kB LingyunWu to previous | to last
2 11-Feb-2010 00:20 1.297 kB LingyunWu to previous | to last
1 04-Feb-2010 11:41 1.296 kB LingyunWu to last
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