__Corbi__: R package for bioinformatics analysis
* Last updated: June 22, 2016

!!!Introduction

Corbi is a [R|http://www.r-project.org] package for bioinformatics analysis. Currently it includes the following tools:
* [CNetQ]: network querying method based on conditional random fields
* [CNetA]: network alignment method based on conditional random fields

!!!Reference
* Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang. [An efficient network querying method based on conditional random fields|http://bioinformatics.oxfordjournals.org/content/27/22/3173]. Bioinformatics, 27(22):3173-3178, 2011.
* Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. [CNetA: Network alignment by combining biological and tolopogical features|http://www.aporc.org/ISB/2012/Proceedings/Papers/ISB2012F38.pdf]. ISB 2012, 220-225.
* Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang. [Corbi: A new R package for biological network alignment and querying|http://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-7-S2-S6]. BMC Systems Biology, 7(S2):S6, 2013. 

!!!Download and Install

!!Stable version

The stable version of [R|http://www.r-project.org] package Corbi can be found at CRAN:
* [https://cran.r-project.org/web/packages/Corbi/]
as well as R-Forge:
* [https://r-forge.r-project.org/projects/corbi/]

To install this package directly within R, type:
{{{install.packages("Corbi")}}}
or
{{{install.packages("Corbi", repos="http://R-Forge.R-project.org")}}}

!!Source code and developmental version

The source code and developmental version of Corbi can be found at GitHub:
* [https://github.com/wulingyun/Corbi]

!!Web services
Corbi has been used in the following online web services:
* [http://app.aporc.org/CNetQ/]
* [http://app.aporc.org/CNetA/]


----
Category: [Software]