Corbi: R package for bioinformatics analysis

• Last updated: June 22, 2016

Introduction#

Corbi is a R package for bioinformatics analysis. Currently it includes the following tools:

• CNetQ: network querying method based on conditional random fields
• CNetA: network alignment method based on conditional random fields

Reference#

• Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang. An efficient network querying method based on conditional random fields. Bioinformatics, 27(22):3173-3178, 2011.
• Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang. CNetA: Network alignment by combining biological and tolopogical features. ISB 2012, 220-225.
• Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang. Corbi: A new R package for biological network alignment and querying. BMC Systems Biology, 7(S2):S6, 2013.

Download and Install#

Stable version#

The stable version of R package Corbi can be found at CRAN:

• https://cran.r-project.org/web/packages/Corbi/

as well as R-Forge:

• https://r-forge.r-project.org/projects/corbi/

To install this package directly within R, type:

install.packages("Corbi")

or

install.packages("Corbi", repos="http://R-Forge.R-project.org")

Source code and developmental version#

The source code and developmental version of Corbi can be found at GitHub:

• https://github.com/wulingyun/Corbi

Web services#

Corbi has been used in the following online web services:

• http://app.aporc.org/CNetQ/
• http://app.aporc.org/CNetA/

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Category: Software