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 code.7z 77.8 kB 3 30-Sep-2011 17:40 LingyunWu Modification to use UGM instead of CRFall
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 data.7z 239.3 kB 2 27-Aug-2011 14:27 LingyunWu

This page (revision-16) was last changed on 22-Jun-2016 23:11 by LingyunWu

This page was created on 07-Jun-2011 18:59 by LingyunWu

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* Last updated: October 21, 2011
* Last updated: June 22, 2016
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* Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang. [An Efficient Network Querying Method Based on Conditional Random Fields|http://bioinformatics.oxfordjournals.org/content/early/2011/09/16/bioinformatics.btr524], Bioinformatics, doi: 10.1093/bioinformatics/btr524, 2011.
* Qiang Huang, Ling-Yun Wu, Xiang-Sun Zhang. [An Efficient Network Querying Method Based on Conditional Random Fields|http://bioinformatics.oxfordjournals.org/content/27/22/3173], Bioinformatics, 27(22): 3173-3178, 2011.
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The network querying method has been implemented as function net.query in R package Corbi, which can be found at R-Forge:
* [Corbi|https://r-forge.r-project.org/projects/corbi/]
The network querying method has been implemented as function net_query in [R|http://www.r-project.org] package Corbi, which can be found at:
* [Corbi]
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To install this package directly within R, type:
{{{install.packages("Corbi", repos="http://R-Forge.R-project.org")}}}
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__Note: The Matlab code is provided here only for record and test purposes, and not recommended for productive use since the code is not fully tuned and optimized. The users are suggested to use the R package provided above since it is more efficient in terms of both running time and memory usage.__
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[More Software ...|Software]
Category: [Supplementary] [Software]
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