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This page (revision-29) was last changed on 20-Nov-2011 22:20 by LingyunWu

This page was created on 06-Mar-2009 20:58 by UnknownAuthor

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[{TableOfContents}]
!!!Genome Analysis (5)
* [HMC]: Haplotype inference tool based on Markov Chain model
* [PTG]: Pasimonious tree-grow method for haplotype inference
* [LOHCRP]: LOH inference and segmentation tool based on conditional random field model
* [CKSAAP-Palm]: a tool for predicting palmitoylation sites from protein sequences
* [PTMPred]: a tool for predicting post-transcriptional modification sites from protein sequences
!!!Molecular Networks (9)
!!Gene Regulatory Networks Inference (2)
* [GNTInfer]: Gene network reconstruction tool with compound targets by integrating multiple microarray datasets and prior information
* [GRNInfer]: Gene regulatory network inference tool from multiple microarray datasets
!!PPI Networks Inference (3)
* [MDCInfer]: PPI prediction tool based on multiple domain cooperation analysis
* [DeterminePPI]: Inferring protein-protein interactions by parsimony principle
* [InferPPI]: Predicting protein interactions based on parsimony tendency of domain interactions
!!Network Module Analysis (2)
* [PPICPM]: Identification of functional modules in PPI network by clique percolation clustering
* [ModularityOptimization]: Modularity optimization in community identification of complex networks
!!Network Alignment (2)
* [MNAligner]: Alignment of molecular networks by quadratic programming
* [PPINA]: Alignment of protein interaction networks by integer quadratic programming
!!!Structure Biology (4)
* [Samo]: Protein structure alignment tool based on multiple objective optimization
* [SANA]: Protein Structure Alignment by Neighborhood Alignment
* [StruComp]: Evaluating protein similarity from coarse structures
* [PSN]: Protein pocket similarity networks
!!!List of Software
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25 15-May-2011 15:38 2.282 kB LingyunWu to previous | to last BioinformaticsSoftware ==> Software
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« This page (revision-29) was last changed on 20-Nov-2011 22:20 by LingyunWu