ViewAttach (66)Info

Add new attachment

Only authorized users are allowed to upload new attachments.

List of attachments

Kind Attachment Name Size Version Date Modified Author Change note
pdf
 Bandyopadhyayetal2010.pdf 2,032.2 kB 1 21-Mar-2012 18:11 YongWang
pdf
 Brehmeetal2010.pdf 301.6 kB 1 21-Mar-2012 18:11 YongWang
pdf
 Gohetal2007.pdf 744.3 kB 1 21-Mar-2012 18:11 YongWang
pdf
 Hanetal2004.pdf 747.1 kB 1 21-Mar-2012 18:11 YongWang
pdf
 Jothietal2009.pdf 2,728.0 kB 1 21-Mar-2012 18:12 YongWang
pdf
 Konigetal2008.pdf 1,639.3 kB 1 21-Mar-2012 18:12 YongWang
pdf
 Kroganetal2006.pdf 0.3 kB 1 21-Mar-2012 18:12 YongWang
pdf
 Leeetal2004.pdf 346.7 kB 1 21-Mar-2012 18:12 YongWang
pdf
 Luscombeetal2004.pdf 413.3 kB 1 21-Mar-2012 18:12 YongWang
pdf
 Marcotteetal1999.pdf 114.0 kB 1 21-Mar-2012 18:12 YongWang
pdf
 Ptaceketal2005.pdf 591.3 kB 1 21-Mar-2012 18:12 YongWang
pdf
 Rualetal2005.pdf 1,987.1 kB 1 21-Mar-2012 18:12 YongWang
pdf
 Wuetal2008.pdf 411.4 kB 1 21-Mar-2012 18:12 YongWang
pdf
 Yildirimetal2007.pdf 820.9 kB 1 21-Mar-2012 18:12 YongWang
pdf
 Yuetal2004.pdf 372.1 kB 1 21-Mar-2012 18:13 YongWang
pdf
 Zhongetal2009.pdf 1,838.0 kB 1 21-Mar-2012 18:13 YongWang
pdf
 altman1995.pdf 1,575.1 kB 1 18-Mar-2012 11:01 YongWang
pdf
 altschul1991.pdf 1,111.6 kB 1 18-Mar-2012 11:02 YongWang
pdf
 altschuletal1990.pdf 838.7 kB 1 18-Mar-2012 11:02 YongWang
pdf
 altschuletal1997.pdf 1,776.3 kB 1 18-Mar-2012 11:02 YongWang
pdf
 bagleyandaltman1995.pdf 1,471.0 kB 1 18-Mar-2012 11:02 YongWang
pdf
 borketal1998.pdf 2,020.8 kB 1 18-Mar-2012 11:02 YongWang
pdf
 bowieetal1991.pdf 754.0 kB 1 18-Mar-2012 11:02 YongWang
pdf
 brownetal2000.pdf 776.1 kB 1 18-Mar-2012 11:02 YongWang
pdf
 bryantandaltschul1995.pdf 893.7 kB 1 18-Mar-2012 11:02 YongWang
pdf
 burgeandkarlin1997.pdf 1,715.5 kB 1 18-Mar-2012 11:02 YongWang
pdf
 chuangetal2007.pdf 449.9 kB 1 21-Mar-2012 18:11 YongWang
pdf
 dayhoffetal1978.pdf 523.8 kB 1 18-Mar-2012 11:02 YongWang
pdf
 doolittleetal1996.pdf 1,041.6 kB 1 18-Mar-2012 11:02 YongWang
pdf
 eisenetal1998.pdf 691.5 kB 1 18-Mar-2012 11:02 YongWang
pdf
 faithetal2007.pdf 2,348.3 kB 1 21-Mar-2012 18:14 YongWang
pdf
 gardneretal2001.pdf 1,157.1 kB 1 21-Mar-2012 18:11 YongWang
pdf
 gardneretal2003.pdf 205.5 kB 1 21-Mar-2012 18:11 YongWang
pdf
 gersteinandlevitt1996.pdf 777.6 kB 1 18-Mar-2012 11:03 YongWang
pdf
 gotoh1982.pdf 210.2 kB 1 18-Mar-2012 11:03 YongWang
pdf
 gribshovetal1987.pdf 438.2 kB 1 18-Mar-2012 11:03 YongWang
pdf
 gribskovanddevereux1994.pdf 695.3 kB 1 18-Mar-2012 11:03 YongWang
pdf
 henikoffandhenikoff1992.pdf 579.2 kB 1 18-Mar-2012 11:03 YongWang
pdf
 karlinandatlschul1990.pdf 663.0 kB 1 18-Mar-2012 11:03 YongWang
pdf
 karpandriley1999.pdf 862.6 kB 1 18-Mar-2012 11:03 YongWang
pdf
 kelleyetal2003.pdf 1,161.5 kB 1 21-Mar-2012 18:12 YongWang
pdf
 koza1994.pdf 941.6 kB 1 18-Mar-2012 11:03 YongWang
pdf
 kroghetal1994.pdf 2,981.7 kB 1 18-Mar-2012 11:03 YongWang
pdf
 lathrop1994.pdf 1,201.1 kB 1 18-Mar-2012 11:03 YongWang
pdf
 lawrence1993.pdf 1,071.9 kB 1 18-Mar-2012 11:03 YongWang
pdf
 lipmanetal1989.pdf 451.6 kB 1 18-Mar-2012 11:03 YongWang
pdf
 maetal2009.pdf 1,048.9 kB 1 21-Mar-2012 18:12 YongWang
pdf
 marcotteetal1999.pdf 546.7 kB 1 18-Mar-2012 11:03 YongWang
pdf
 mcclureetal1994.pdf 1,656.2 kB 1 18-Mar-2012 11:04 YongWang
pdf
 needlemanandwunsch1970.pdf 697.4 kB 1 18-Mar-2012 11:04 YongWang
pdf
 nei1996.pdf 1,983.2 kB 1 18-Mar-2012 11:04 YongWang
pdf
 nussinovandwolfson1991.pdf 656.3 kB 1 18-Mar-2012 11:04 YongWang
pdf
 orengoandtaylor1996.pdf 851.9 kB 1 18-Mar-2012 11:04 YongWang
pdf
 pendersenandmoult1997.pdf 1,842.5 kB 1 18-Mar-2012 11:04 YongWang
pdf
 preveligeandfasman1989.pdf 966.1 kB 1 18-Mar-2012 11:04 YongWang
pdf
 richards1985.pdf 960.6 kB 1 18-Mar-2012 11:04 YongWang
pdf
 richards1991.pdf 936.4 kB 1 18-Mar-2012 11:04 YongWang
pdf
 sippl1995.pdf 675.6 kB 1 18-Mar-2012 11:04 YongWang
pdf
 smith1990.pdf 811.3 kB 1 18-Mar-2012 11:05 YongWang
pdf
 smithandwaterman1981.pdf 161.2 kB 1 18-Mar-2012 11:05 YongWang
pdf
 subbiahetal1993.pdf 847.4 kB 1 18-Mar-2012 11:05 YongWang
pdf
 thompsonetal1994.pdf 966.1 kB 1 18-Mar-2012 11:05 YongWang
pdf
 thorneetal1991.pdf 1,044.9 kB 1 18-Mar-2012 11:05 YongWang
pdf
 ungerandmoult1993.pdf 622.2 kB 1 18-Mar-2012 11:05 YongWang
pdf
 workmanetal2006.pdf 424.1 kB 1 21-Mar-2012 18:12 YongWang
pdf
 zuker1989.pdf 587.9 kB 1 18-Mar-2012 11:05 YongWang

This page (revision-10) was last changed on 21-Mar-2012 18:27 by YongWang

This page was created on 16-Mar-2012 09:30 by YongWang

Only authorized users are allowed to rename pages.

Only authorized users are allowed to delete pages.

Difference between version and

At line 3 added one line
Altman, R.B. A Probabilistic Approach to Determining Biological Structure: Integrating Uncertain Data Sources. Int. J. Human-Computer Studies, 42, pp. 593-616, 1995.
At line 5 added one line
Altschul, S.F. Amino Acid Substitution Matrices from an Information Theoretic Perspective. J. Mol. Bio. , 219, pp. 555-565, 1991.
At line 7 added 93 lines
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. Basic Local Alignment Search Tool. J. Mol. Biol., 215, pp. 403-410, 1990.
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. Gapped BLAST and PSI-BLAST: A New Generation of Protein Database Search Programs. Nucleic Acids Research, 25(17), pp. 3389-3402, 1997., pp. 698-700, 1987.
Bagley, S.C. and Altman, R.B. Characterizing the Microenvironment Surrounding Protein Sites. Protein Science, 4, pp. 622 -635, 1995.
Bork, P., Dandekar, T., Diaz -Lazcoz, Y., Eisenhaber, F., Huynen, M., and Yuan, Y. Predicting Function: From Genes to Genomes and Back. J. Mol. Biol., 283, pp. 707-725, 1998.
Bowie, J.U., Luthy, R., and Eisenberg, D. A Method to Identify Protein Sequences that Fold into a Known Three-Dimensional Structure. Science, 253, pp. 164 -170, 1991.
Brown, M.P.S., Grundy, W.N., Lin, D., Cristianini, N., Sugent, C.W., Furey, T.S., Ares Jr., M., and Haussler, D. Knowledge-based Analysis of Microarray Gene Expression Data by Using Support Vector Machines. PNAS, 97(1), pp. 262-267, 2000.
Bryant, S.H. and Altschul, S.F. Statistics of Sequence-structure Threading. Current Opinion in Structural Biology, 5, pp. 236-244, 1995.
Burge, C. and Karlin, S. Prediction of Complete Gene Structures in Human Genomic DNA. J. Mol. Biol., 268, pp. 78-94, 1997.
Dayhoff, M.O., Schwartz, R.M., and Orcutt, B.C. A Model of Evolutionary Change in Proteins. Atlas of Protein Sequence and Structure, v. 5 suppl. 3, pp. 345-352, 1978.
Doolittle, R.F., Feng, D-F, Tsang, S., Cho, G., and Little, E. Determining Divergence Times of the Major Kingdoms of Living Organisms with a Protein Clock. Science, 271, pp. 470-477, 1996.
Eisen, M.B., Spellman, P.T., Brown, P.O., and Botstein, D. Cluster Analysis and Display of
Genome-wide Expression Patterns. Proc. Natl. Acad. Sci. USA, 95, pp. 12863-14868, 1998.
Gerstein, M. and Levitt, M. Using Iterative Dynamic Programming to Obtain Accurate Pairwise and Multiple Alignments of Protein Structures. Proc. of ISMB-96, pp. 59-67, 1996.
Gotoh, O. An Improved Algorithm for Matching Biological Sequences. J. Mol. Biol., 162, pp.
705-708, 1982.
Gribskov, M., McLachlan, A.D., and Eisenberg, D. Prot ein Analysis: Detection of Distantly Related Proteins. Proc. Natl. Acad. Sci. USA, 84, pp. 4355-4358, 1987.
Gribskov, M. and Devereux, J. Dynamic Programming Methods. In Sequence Analysis Primer.
W.H. Freeman and Company, NY, pp. 123 -137, 1994.
Henikoff, S. and Henikoff, Jorja G. Amino Acid Substitution Matrices from Protein Blocks. Proc. Natl. Acad. Sci. USA, 89, pp. 10915-10919, 1992.
Karlin, S. and Altshcul, S.F. Methods for Assessing the Statistical Significance of Molecular Sequence Features by Using General Scoring Schemes. Proc. Natl. Acad. Sci. USA, 87, pp. 2264-2268, 1990.
Karp, P.D. and Riley, M. EcoCyc: The Resource and the Lessons Learned. SRI Report, January
21, 1999.
Koza, J.R. Evolution of a Computer Program for Classifying Protein Segments as Transmembrane Domains Using Genetic Programming. Proc. of ISMB-94, pp. 244-252, 1994.
Krogh, A., Brown, M., Mian, I.S., Sjolander, K., and Haussler, D. Hidden Markov Models in
Computational Biology. J. Mol. Biol., 235. pp. 1501-1531, 1994.
Lathrop, R.H. The Protein Threading Problem with Sequence Amino Acid Interaction Preferences is NP -Complete. Protein Engineering, 7:9, pp. 1059-1068, 1994.
Lawrence, C.E., Altschul, S.F., Boguski, M.S., Liu, J.S., Neuwald, A.F., Wootton, J.C. Detecting Subtle Sequence Signals: A Gibbs Sampling Strategy for Multiple Alignment. Science, 262, pp. 208-214, 1993.
Lipman, D.J., Altschul, S.F., and Kececioglu, J.D. A Tool for Multiple Sequence Alignment. Proc. Natl. Acad. Sci. USA, Vol. 86, pp. 4412-4415, 1989.
Marcotte, E.M., Pellegrini, M., Thompson, M.J., Yeates, T.O., and Eisenberg, D. A Combined
Algorithm for Genome-wide Prediction of Protein Function. Nature, Vol. 402, pp. 83-86, 1999.
McClure, M.A., Vasi, T.K., and Fitch, W.M. Comparative Analysis of Multiple Protein-Sequence Alignment Methods. Mol. Biol. Evol., 11:4, pp. 571-592, 1994.
Needleman, S.B. and Wunsch, C.D. A General Method Applicable to the Search for Similarities in Amino Acid Sequence of Two Proteins. J. Mol. Biol., 48, pp. 443 -453, 1970.
Nei, M. Phylogenetic Analysis in Molecular Evolutionary Genetics. Annu. Rev. Genet., 30, pp. 371-403, 1996.
Nussinov, R. and Wolfson, H.J. Efficient Detection of Three -dimensional Structural Motifs in Biological Macromolecules by Computer Vision Techniques. Proc. Natl. Acad. Sci. USA, 88, pp. 10495-10499, 1991.
Orengo, C.A. and Taylor, W.R. SSAP: Sequential Structure Alignment Program for Protein
Structure Comparison. Methods in Enzymology, 266, pp. 617-635, 1996.
Pedersen, J.T. and Moult, J. Protein Folding Simulations with Genetic Algorithms and a Detailed Molecular Description. J. Mol. Biol., 269, pp. 240 -259, 1997.
Prevelige, P. and Fasman, G.D. Chou-Fasman Prediction of the Secondary Structure of Proteins: The Chou-Fasman-Prevelige Algorithm. In Prediction of Protein Structure and the Principles of Protein Conformation (G.D. Fasman, ed.) Plenum Publishing, N.Y., pp. 391 -416, 1989.
Richards, F.M. Calculation of Molecular Volumes and Areas for Structures of Known Geometry. Methods in Enzymology, 115, pp. 440 -464, 1996.
Richards, F.M. The Protein Folding Problem. Scientific American, pp. 54-63, January 1991.
Sippl, M.J. Knowledge-based Potentials for Proteins. Current Opinion in Structural Biology, 5, pp. 229-235, 1995.
Smith, T.F. The History of the Genetic Sequence Databases. Genomics, 6, pp. 701-707, 1990.
Smith, T.F. and Waterman, M.S. Identification of Common Molecular Subsequences. J. Mol. Biol., 147, pp. 195-197, 1981.
Subbiah, S., Laurents, D.V., and Levitt, M. Structural Similarity of DNA -binding Domains of Bacteriophage Repressors and the Globin Core. Current Biology, 3:3, pp. 141-148, 1993.
Thompson, J.D., Higgins, D.G., and Gibson, T.J. CLUSTAL W: Improving the Sensitivity of
Progressive Multiple Sequence Alignment through Sequence Weighting, Position-specific Gap
Penalties and Weight Matrix Choice. Nucleic Acids Research, 22(22), pp. 4673-4680, 1994.
Thorne, J.L., Kishino, H., and Felsenstein, J. An Evolutionary Model for Maximum Likelihood Alignment of DNA Sequences. J. Mol. Evol., 33, pp. 114-124, 1991.
Unger, R. and Moult, J. Genetic Algorithms for Protein Folding Simulations. J. Mol. Biol., 231, pp. 75-81, 1993.
Zuker, M. On Finding All Suboptimal Foldings of an RNA Molecule. Science, 244, pp. 48-52, 1989.
Version Date Modified Size Author Changes ... Change note
10 21-Mar-2012 18:27 14.845 kB YongWang to previous
9 21-Mar-2012 18:18 13.84 kB YongWang to previous | to last
8 21-Mar-2012 18:10 12.997 kB YongWang to previous | to last
7 21-Mar-2012 18:09 12.996 kB YongWang to previous | to last
6 21-Mar-2012 18:08 12.971 kB YongWang to previous | to last
5 21-Mar-2012 18:03 12.973 kB YongWang to previous | to last
4 21-Mar-2012 18:00 12.88 kB YongWang to previous | to last
3 21-Mar-2012 17:57 12.874 kB YongWang to previous | to last
2 16-Mar-2012 09:39 7.145 kB YongWang to previous | to last
1 16-Mar-2012 09:30 0.173 kB YongWang to last
« This page (revision-10) was last changed on 21-Mar-2012 18:27 by YongWang